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842 results

BioExcel CoE
Basics of docking and introduction to HADDOCK

PRACE 2021 Autumn School: Fundamentals of Biomolecular Simulations and Virtual Drug Development Presenter: Prof.

1:07:48
Basics of docking and introduction to HADDOCK

14,565 views

3 years ago

EOSC-hub Project
Alexandre Bonvin - HADDOCK thematic service

Alexandre Bonvin, scientific director at Bijvoet Centre for Biomolecular Research who has led the WeNMR community for over 10 ...

13:25
Alexandre Bonvin - HADDOCK thematic service

6,946 views

5 years ago

UW-Madison Department of Biochemistry
HADDOCK (High-Ambiguity Driven Docking) Workshop

Alexandre Bonvin, PhD Professor of Computational Structural Biology Faculty of Science, Utrecht University, The Netherlands ...

2:52:39
HADDOCK (High-Ambiguity Driven Docking) Workshop

6,947 views

7 years ago

Pymol Biomolecules
How to dock 1000 ligands in Autodock vina

PymolBiomoleculesTutorials molecular docking of multiple ligands with a single protein in Autodock vina virtual screening.

3:56
How to dock 1000 ligands in Autodock vina

19,163 views

4 years ago

BioExcel CoE
Integrative modeling of biomolecular complexes - Part 1

This lecture was delivered by Prof. Alexandre Bonvin as part of the 2020 Remote BioExcel Summer School on Biomolecular ...

45:38
Integrative modeling of biomolecular complexes - Part 1

2,422 views

5 years ago

Pymol Biomolecules
Autodock Vina tutorial for Molecular Docking

PymolBiomoleculesTutorials 00:00 setup 01:13 Protein preparation 02:55 Remove water, ligands, cofactors, unwanted chains ...

14:22
Autodock Vina tutorial for Molecular Docking

3,113 views

4 years ago

Erik Lindahl
Lecture 12, concept 22: Docking scoring functions can be physical, empirical, or knowledge-based

So that was the first step of docking generating lots of confirmations and at that point generate anything you don't have to know ...

3:29
Lecture 12, concept 22: Docking scoring functions can be physical, empirical, or knowledge-based

4,953 views

4 years ago

Pymol Biomolecules
Autodock result protein-ligand interaction analysis using pymol | pymol biomolecules

... autodock molecular docking https://www.youtube.com/watch?v=bjhcPjn7-60&list=PLs_nni5HZu9aPJ8ATT2lD4wmpNi1lz9R2 ...

9:30
Autodock result protein-ligand interaction analysis using pymol | pymol biomolecules

49,178 views

3 years ago

Sari Sabban
AutoDock Vina Tutorial

This is a video tutorial on small organic molecule docking and virtual screening using AutoDock Vina. Here I discuss the protocol ...

1:02:02
AutoDock Vina Tutorial

36,764 views

6 years ago

BioExcel CoE
BioExcel Webinar #26: High Confidence Protein−Ligand Complex Modeling

Structure-based drug design is routinely used in modern day drug discovery. However, the success of this process is very much ...

1:08:10
BioExcel Webinar #26: High Confidence Protein−Ligand Complex Modeling

425 views

7 years ago

Bio Informatika
Receptor PDB to PDBQT: Autodock Vina Basic Molecular Docking Tutorial

Check out my skool community for molecular docking ...

0:57
Receptor PDB to PDBQT: Autodock Vina Basic Molecular Docking Tutorial

1,078 views

1 year ago

BioExcel CoE
Bioexcel webinar #80 Accounting for protein and ligand flexibility in molecular docking

Knowledge of atomic-level structures of ligand-protein complexes is key for basic research and structure-based drug design.

58:45
Bioexcel webinar #80 Accounting for protein and ligand flexibility in molecular docking

296 views

11 months ago

GT-MASIM
Re-docking of available MPro co-crystal ligands by Maria Kadukova@MASIM SARS Cov2 event (Nov 2020)

Presentation delivered by Maria Kadukova (PhD candidate@Nano-D, Inria Grenoble, France) during a series of talks organized in ...

23:27
Re-docking of available MPro co-crystal ligands by Maria Kadukova@MASIM SARS Cov2 event (Nov 2020)

202 views

5 years ago

Nirmaladevi Ponnusamy
Online tools for molecular docking (Part-2)

The Molecular Docking (MD) server is a web-based, user-friendly tool with an intuitive interface that manages all aspects of MD, ...

16:09
Online tools for molecular docking (Part-2)

130 views

4 years ago

Frobnitzem
High-Throughput Virtual Laboratory for Drug Discovery Using Massive Datasets

Molecular docking is one of the calculations used in structure-based drug discovery. It simulates the binding of small drug-like ...

25:35
High-Throughput Virtual Laboratory for Drug Discovery Using Massive Datasets

458 views

5 years ago

NETANDROID
Grid selection: Grid parameter file and Docking parameter file preparation

Drug Discovery.

4:32
Grid selection: Grid parameter file and Docking parameter file preparation

3,011 views

7 years ago

V&AR VENISE
CoRSAIRe / BioInfo: VR and Multimodality for Protein Docking - VENISE group

CoRSAIRe / BioInfo: VR and Multimodality for Protein Docking - VENISE group (www.limsi.fr/venise/) The goal of the CoRSAIRe ...

2:23
CoRSAIRe / BioInfo: VR and Multimodality for Protein Docking - VENISE group

559 views

13 years ago

Pymol Biomolecules
Autodock Molecular Docking tutorial for Beginners no command prompt

PymolBiomoleculesTutorials 00:18 Protein preparation 00:54 Remove water, ligands, cofactors, unwanted chains 1:28 save as ...

18:42
Autodock Molecular Docking tutorial for Beginners no command prompt

5,017 views

4 years ago

Erik Lindahl
Lecture 12, concept 21: Fragment-based drug design tries to build a drug into a pocket

... would fit even better anchor and grow build molecules in the receptor one by one just as before for docking sloppy is our middle ...

1:45
Lecture 12, concept 21: Fragment-based drug design tries to build a drug into a pocket

2,983 views

4 years ago

BioExcel CoE
Integrative modeling of biomolecular complexes - Part 2

This lecture was delivered by Prof. Alexandre Bonvin as part of the 2020 Remote BioExcel Summer School on Biomolecular ...

40:41
Integrative modeling of biomolecular complexes - Part 2

604 views

5 years ago