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735 results

BioExcel CoE
Basics of docking and introduction to HADDOCK

PRACE 2021 Autumn School: Fundamentals of Biomolecular Simulations and Virtual Drug Development Presenter: Prof.

1:07:48
Basics of docking and introduction to HADDOCK

14,469 views

3 years ago

EOSC-hub Project
Alexandre Bonvin - HADDOCK thematic service

Alexandre Bonvin, scientific director at Bijvoet Centre for Biomolecular Research who has led the WeNMR community for over 10 ...

13:25
Alexandre Bonvin - HADDOCK thematic service

6,893 views

5 years ago

UW-Madison Department of Biochemistry
HADDOCK (High-Ambiguity Driven Docking) Workshop

Alexandre Bonvin, PhD Professor of Computational Structural Biology Faculty of Science, Utrecht University, The Netherlands ...

2:52:39
HADDOCK (High-Ambiguity Driven Docking) Workshop

6,935 views

7 years ago

Pymol Biomolecules
Autodock Vina tutorial for Molecular Docking

PymolBiomoleculesTutorials 00:00 setup 01:13 Protein preparation 02:55 Remove water, ligands, cofactors, unwanted chains ...

14:22
Autodock Vina tutorial for Molecular Docking

3,107 views

4 years ago

Pymol Biomolecules
How to dock 1000 ligands in Autodock vina

PymolBiomoleculesTutorials molecular docking of multiple ligands with a single protein in Autodock vina virtual screening.

3:56
How to dock 1000 ligands in Autodock vina

19,098 views

4 years ago

BioExcel CoE
Integrative modeling of biomolecular complexes - Part 1

This lecture was delivered by Prof. Alexandre Bonvin as part of the 2020 Remote BioExcel Summer School on Biomolecular ...

45:38
Integrative modeling of biomolecular complexes - Part 1

2,420 views

5 years ago

Sari Sabban
AutoDock Vina Tutorial

This is a video tutorial on small organic molecule docking and virtual screening using AutoDock Vina. Here I discuss the protocol ...

1:02:02
AutoDock Vina Tutorial

36,751 views

6 years ago

Pymol Biomolecules
Autodock Molecular Docking tutorial for Beginners no command prompt

PymolBiomoleculesTutorials 00:18 Protein preparation 00:54 Remove water, ligands, cofactors, unwanted chains 1:28 save as ...

18:42
Autodock Molecular Docking tutorial for Beginners no command prompt

4,999 views

4 years ago

Pymol Biomolecules
Autodock result protein-ligand interaction analysis using pymol | pymol biomolecules

... autodock molecular docking https://www.youtube.com/watch?v=bjhcPjn7-60&list=PLs_nni5HZu9aPJ8ATT2lD4wmpNi1lz9R2 ...

9:30
Autodock result protein-ligand interaction analysis using pymol | pymol biomolecules

48,889 views

3 years ago

BioExcel CoE
BioExcel Webinar #26: High Confidence Protein−Ligand Complex Modeling

Structure-based drug design is routinely used in modern day drug discovery. However, the success of this process is very much ...

1:08:10
BioExcel Webinar #26: High Confidence Protein−Ligand Complex Modeling

424 views

7 years ago

BioExcel CoE
HADDOCK demonstrations and hands-on session

PRACE 2021 Autumn School: Fundamentals of Biomolecular Simulations and Virtual Drug Development Presenter: Prof.

1:02:59
HADDOCK demonstrations and hands-on session

8,241 views

3 years ago

Erik Lindahl
Lecture 12, concept 22: Docking scoring functions can be physical, empirical, or knowledge-based

So that was the first step of docking generating lots of confirmations and at that point generate anything you don't have to know ...

3:29
Lecture 12, concept 22: Docking scoring functions can be physical, empirical, or knowledge-based

4,936 views

4 years ago

GT-MASIM
Re-docking of available MPro co-crystal ligands by Maria Kadukova@MASIM SARS Cov2 event (Nov 2020)

Presentation delivered by Maria Kadukova (PhD candidate@Nano-D, Inria Grenoble, France) during a series of talks organized in ...

23:27
Re-docking of available MPro co-crystal ligands by Maria Kadukova@MASIM SARS Cov2 event (Nov 2020)

200 views

5 years ago

Nirmaladevi Ponnusamy
Online tools for molecular docking (Part-2)

The Molecular Docking (MD) server is a web-based, user-friendly tool with an intuitive interface that manages all aspects of MD, ...

16:09
Online tools for molecular docking (Part-2)

130 views

4 years ago

Nirmaladevi Ponnusamy
An introduction to molecular docking (MD) for beginners

To predict the preferred orientation/conformation and interaction between the two molecules (intermolecular framework) and form ...

10:03
An introduction to molecular docking (MD) for beginners

306 views

4 years ago

BioExcel CoE
Bioexcel webinar #80 Accounting for protein and ligand flexibility in molecular docking

Knowledge of atomic-level structures of ligand-protein complexes is key for basic research and structure-based drug design.

58:45
Bioexcel webinar #80 Accounting for protein and ligand flexibility in molecular docking

291 views

11 months ago

Bio Informatika
Receptor PDB to PDBQT: Autodock Vina Basic Molecular Docking Tutorial

Check out my skool community for molecular docking ...

0:57
Receptor PDB to PDBQT: Autodock Vina Basic Molecular Docking Tutorial

1,057 views

1 year ago

STEM RTCL TV
Harnessing protein folding neural networks for peptide–protein docking | RTCL.TV

Keywords ### #monomerstructures #providehighly #highlyaccurate #accuratepredictions #proteinmonomer #structures ...

0:24
Harnessing protein folding neural networks for peptide–protein docking | RTCL.TV

49 views

2 years ago

Nirmaladevi Ponnusamy
Online tools for molecular docking (Part-1)

The Molecular Docking (MD) server is a web-based, user-friendly tool with an intuitive interface that manages all aspects of MD, ...

11:40
Online tools for molecular docking (Part-1)

130 views

4 years ago

Erik Lindahl
Lecture 12, concept 26: Docking quality depends on the input structure or homology model quality

So what do docking results look like well that depends a lot on what you're starting from in some cases it can look beautiful the ...

2:50
Lecture 12, concept 26: Docking quality depends on the input structure or homology model quality

2,028 views

4 years ago